Sunday, February 20, 2011

Emulators That Trade Pokemon Mac

distribution models applied to conservation of Andalusia

recently from the Department of Geodiversity and Biodiversity of the Ministry of Environment of the Junta de Andalucía and EGMASA I commissioned the project "Flora Distribution Models for assisting decision making in conservation plans."

The project objective is to obtain distribution patterns of high-resolution (40 meters) to assist in defining the areas of activity of 108 species of threatened flora of the following conservation plans:
  • Reintroduction Plan, Conservation and Management Flora of Altas Cumbres.
  • Conservation and Recovery Plan of Petridófitos
  • Conservation and Recovery Plan Plants Dunes, Coastal and Litoral Arenales
The Flora Conservation Department gave us the necessary information on the distribution of species (from the FAME; Flora Threatened Andalucía). With presence records (a total of 43,912) calibrate models using MaxEnt, using 55 predictor variables (topography, climate, hydrology, thematic layers, frequencies and distances to various entities, and Landsat bands). As a result, for each species got:
  • A model Distribution: raster map where each cell contains the probability 40x40 presence of the species.
  • A vector file of potential presence of the species: a summary of the previous model, and defines the areas of highest probability of presence.
Of the 108 species models got 89, which classified them into three groups:
  • Applicable: 53 models appropriate for the project.
  • Caution: 20 models to be applied carefully, because they have achieved a good fit, either by the low number of presences or for other reasons. Discard
  • : 16 models is better or looking through a very bad fit. Last 17
February, with work already completed, I met with the leaders to show the results and deliver the material, and things went pretty well (at least so it seemed!). I thank you from here their interest and involvement (and hold my talk for two hours), Fernando Ortega Alegre, Carmen Rodriguez Hiraldo, José Rafael López and Antonio Garrido J. Sanchez Almendros

I am particularly pleased with the project because it is the first time that distribution models are applied to the management of threatened flora in Spain. I am happy to contribute if only indirectly on the conservation of our flora, and especially using a tool that come trusting several years.

That's it!

Gay Cruising Areas In Tempe

VII workshop ecological niche modeling

For several years Coordination Unit of GBIF Spain organizes workshops ecological niche modeling. Yo I went to the first one in 2005, taught by Dr. David Draper, and was an important first step to improve the rudimentary knowledge of distribution modeling was at that time. I also attended the same workshop in 2007, this time conducted by Dr. Francisco J. Bonet, and by chance was the beginning of the career opportunities that I enjoy at this time (but that's another story.)

The last three years The workshop was conducted by Dr. Elisa Liras ( here is the content of the last ), but this time it seems that Elisa was not available, contacted Curro Bonet, and he was kind enough to spend the gift to me.

So 10 to 13 May this year I will be in the computer room of the Royal Botanic Gardens Madrid giving the workshop.

I am currently preparing the agenda, so for now I can not give many details. Yes I can say that (if all goes as it should) work on Ubuntu (the virtual machine prepared for subject "Ecoinformatics" ) And as main tools we use MaxEnt , OpenModeller , + Quantum GIS GRASS and R . Try from the basics of distribution models to more advanced applications, such as invasibility studies, effect of climate change on species distribution, and give us time.

If you are interested, stay tuned to the section "Education and Outreach" (not yet open enrollment period.)

Greetings and see you in Madrid!

Wednesday, February 16, 2011

What Does The Shock Belt Do

article in Climatic Change: Effects of Warming del clima en la vegetación de Sierra Nevada

few months ago I wrote the entry "Your manuscript has-been Accepted ... ", which had the" adventures and misadventures "lived to publish the paper" Simulating Potential effects of climatic warming on altitudinal patterns of key species in Mediterranean-Alpine Ecosystems "which is an improved version of my work get the DEA (and written in 2007), and has finally been published in the journal Climatic Change . Then I do a small summary of the paper.

One of the effects of climate change observed in plants is the latitudinal and altitudinal displacement of populations. In this displacement occur at the edges of stocks advancing fronts (areas of new colonization) front and back (areas of local extinction). To explore this issue further in Sierra Nevada, this paper simulates changes in the potential distribution of four vegetation types (oak, holm-padded brushwood and grass enebral psicroxerófilo) along the XXI century on four climate change scenarios with two objectives:
  1. assess the potential effect of climate warming on the Potential area of \u200b\u200bvegetation.
  2. Describe and apply a simple method called Differential Approval, which allows you to locate fronts advance and retreat of populations, and predict the potential succession patterns between different formations.
The modeling method was fairly simple. Calibrate models of potential distribution (eye, potential distribution refers to the habitat conditions for the species as the variables used to calibrate the model, not the actual distribution) present for the four formations using MaxEnt , taking as input points presence of training and four predictor variables (mean annual temperature, humidity topographic index, average annual solar radiation and slope), and projected on each of the scenarios of climate warming at intervals of 15 years.

The first analysis did was to calculate the potential areal extent of each formation over time, resulting in something like this:

is clear the general downward trend, especially in formations characteristic of the higher areas.

The concept Suitability differential works like this: if we have two consecutive distribution patterns over time, the first you subtract the values \u200b\u200bof a second and get the change. Where the values \u200b\u200bare positive, improving the conditions for the species (possible fronts of progress) and which are negative, worse (possible front-back). The figure below explains the concept: you can see the model t0 ( to , the more intense the green, the better), the original model and expanded points of presence (b ), the model t1 (c , notes the ideal area shift); fitness differential (d , the more red, worse).

Now attention to the following idea: given species A and B, for which they have their own distribution models and future, if in a population of A fitness for A decreases while increases the suitability for B, then the ecological conditions are favoring that B replaces A.

I applied this concept to the four plant communities, and summarized the results in the following diagram, which represents the potential for substitution pattern among the four vegetation types:
Each node represents a vegetation type, and numbers (and arrows as sense and thickness) represent average habitat suitability populations. Within the nodes represents the change of fitness in training, and the arrows represent transfers between training eligibility. To better explain, I focus on the oak: the average fitness of populations of oaks goes from 48 to 3, while the actual populations of oak will win 19 points suitability for oaks. Therefore, we think that the oaks can build on the oak.

Of course, all the results of this study must be interpreted bearing in mind that working with models and scenarios, with all the uncertainty that that implies. The results should not be taken as predictions, but they provide indicators and allow us to gain new perspectives from which to confront the problem of climate change.

I hope you like the original!.

Sunday, February 6, 2011

Does Rephresh Leave A Cottage Cheese Discharge

Variables climáticas, temáticas y topográficas para modelos de distribución (Andalucía)

Finally, after years of waiting, and again thanks to Dr. Ramón (and the infrastructure that provides iEcoLab ), I have material to hang up "heavy" permanently. So, taking advantage of this situation, I have uploaded for free download the variables I used to calibrate predictive models of distribution of the final chapters of my thesis .

To be more precise, what I posted are 309 raster maps in ARCINFO ESRI ASCII format and coordinate system 23030 EPSG (ED50 UTM zone 30) covering the mainland of Andalusia at a resolution 40 meter horizontal. The maps have a 7500 x 13000 cells, leaving them at around 54.7 million cells (rounded). Are compressed. Zip, with sizes discharge ranging between 128 and 1.5 MB.

To access the downloads you can go to the page thesis in paragraph Predictors. Within the directory there are two folders:
  • climate: climatic maps containing the average annual precipitation and mean maximum and minimum temperatures in summer and winter for the period 2000-2100 in 10 years for combination of the IPCC scenarios A2 and B2 with global circulation models and CGCM2 ECHAM4. These maps have been derived from information made publicly available by the AEMET . More information in the README file .
  • other : contains a miscellany of variables ranging from distance to entities of interest, frequency of these entities, Landsat bands, NDVI, and a good set of topographic variables. More information and a complete list of maps, on the other README file.


These variables are ideal for calibrating models of distribution and project into the future with the aim of evaluating the potential impact of climate change on species distribution, or simply to meet the environmental conditions different populations (no matter whether lettuce or bugs) along the territory.

If you're going to use them, I'd appreciate that you had in mind two things:
  1. Please, if you're going to publish a work in which you use this data, citalopram as Benito, BM (2009) Applied to the Conservation Ecoinformatics : Simulation of Effects of Global Change on the Distribution of the Flora of Andalusia. Doctoral Thesis, Department of Botany, University of Granada (URL: http://ide.ugr.es/blasbenito/tesis/) .
  2. Our server has a limited bandwidth. We are very grateful to not abuse downloading everything at once, and, if possible (which it is!), programming your massive downloads to run at night so as not to hinder daily access to data from other users.
The quote I hope that changes soon to a journal article indexed, but for now this is worth.

If you have problems or suggestions regarding this dataset, do not hesitate to contact me.

That's all folks!

Tuesday, February 1, 2011

Skates Hurt My Arches

Una rápida de gestión ambiental...

The subject, a plant endemic Limonium estevei . The area, Rambla Macenas (Almería province, near Mojácar). The subject, "Greatest Hits of environmental management", exceeding sales list to the "Law 8 / 2003 of 28 October, flora and fauna."

Pictured:
  • background aerial photo of 2007
  • red
  • the only known populations in the world of this plant (hand drawn here, so the geo is approximate)
  • yellow
  • potential habitat distribution models obtained by (for those times when we were looking "hidden" populations by distribution models)
  • and giftware, the Beach and Beach Resort Macenas